Minutes

Date: 10th April 2018
Attendees:

• Marshall Ward (MW) (Chair), NCI
• Aidan Heerdegen (AH) and Andrew Kiss (AK), CLEX ANU
• Russ Fiedler (RF), Matt Chamberlain (MC), CSIRO Hobart
• Peter Dobrohotoff (PD), CSIRO Aspendale

MW: cylc is good, small and configurable. rose is difficult and opaque.

AH: Will get some help from others via the cm2-om2-harmonisation slack channel

AH: Next step is to do the same for CICE5 as has been done for MOM5.

NH: CSIRO is getting CICE from the UKMO. There are code changes under src, not just in the drivers.

AH: Does UKMO version of CICE5 have a special licence? Will we be able to host UKMO modifications to CICE5 on OceansAus repo? NH: CICE has a CICE licence

The 2018 COSIMA workshop will be held at ANU on 7-8 May.

As has been traditional with this workshop, Day 1 (Monday 7th May) will focus more on scientific aspects of our modelling, starting at about 10am and running through to 5pm.

Day 2 (Tuesday 8th May) will be more technically oriented, including a workshop on the use of the COSIMA cookbook. We will finish by 4pm to allow for those visitors who need to fly home.

Any questions, please contact Andy Hogg. A full program will be posted here shortly.

MEETING NOTES COSIMA SEA-ICE WORKING GROUP MEETING:

28 Feb 2018, 10:00 - 11:30am
Meeting held on Zoom.

Present: Andrew Kiss, Adele Morrison, (anyone else at ANU?), Andrew Hogg, Siobhan O'Farrell, Simon Marland,
         Fabio Diaz, xxx (1 other PhD student at CSIRO Aspendale), Will Hobbs, Petra Heil and from 11am Paul Spence.
Apologies: Nicolas Hannah, Matt E.

=======================================================
1) Recap of the AMOS presentation on COSIMA results so far.
ACCESS-OM2 suite (Andrew Kiss)
Based on MOM5, CICE5, OASIS3, Repeat year atm forcing.
Tripolar grid 1/10^o, 75 vertical resolution
Slow to run: 17hours/yr; 5559 PEs; dt = 450s   --> eddy resolving
Tripolar grid 1^o, 75 vertical resolution
              6mins/yr;  252 PEs; dt = 5400s   
------
Previous issue: 
Negative solution: Russ Fiedler fixed
         If salinity locally is less than 5 PSU, then salinity comes from the 
         surrounding.
------
Sea-ice thickness (1month average): Shows neat DKPs in Arctic.
=======================================================
2) Simon M: 
Fabio is working: Restoring 1^oC: NCEP/NCAR reanal rather than core runoff.
=======================================================
3) ACCESS-OM2 CICE config

Current CICE config in the coupled ocean/sea-ice mode:
4 ice layers plus snow
5 thickness categories
mushy ice TD
classic EVP Dynamics
melt poinds 
JRA55 - do V1.3 1984/85 repeat years forcing, 0.5625^o, 3 hourly
SSS restoring to WOA 2013 V2
1200 PUs for CICE + 4358PUS for MOM + 1 for Matm
--> No polynyas in 1/10^o even though JRA has good katabatics (Adele Land)
     --> look at LHF + net ice production
---
Ice volume in 1/10^o in Arctcic is too high: in access of 30Mio km^3
  Piomass comparison
--- 
Issues: 
* spin up
* compatible physical parameters in Mom & CICE   <-- not working
- TC using mushy ice TD but Bitz & Lipscome is xxx (? cannot read my notes)
- EVP or EAP? --> EVP seems to do ok producing DKPs  --> Use revised EVP.
=======================================================
4) What to use for validation? 
Simon M: Tamura's polynya ice prodution.
=======================================================
5) IcePack has been released (Petra)
Can it be ported to NCI?
=======================================================
6) Timing of COSIMA configs? 
Nick H. is still using/working on MOM5.
Hence MOM6 work is delayed. 
 But Los Alamos are doing MOM (?? which version) with CICE6.
=======================================================
7) Next steps: 
Start MOM6 with SIS2 for ease!!!
 1) Timing of advance and retreat   --> Siobhan OF: That is controlled by JRA forcing.
 2) Ice motion?  AVHRR data to compare  <-- Follow this one up.
=======================================================
8) Various:
* John Spence: 
Compare namelists with those used by others.
PH: Check with what the Arctic high-res folks use. 

* SOF: European updata: LIM2/3, Gelato (CERFACS and UKMet).
  --> Access: Where to couple ?  <-- new UKMet model: 2019 to do runs.
                                     --> C-grid (NEMO?)
=======================================================
=======================================================
Next meeting: 
At COSIMA workshop, Canberra, 08/09 May 2018
=======================================================

Over the last few months, COSIMA folks have been working hard on releasing our ACCESS-OM2 suite of models. The current status is that we have now completed a 500 year spinup for 3 different cases using the JRA55-do (Tsujino et al., 2017, personal communication) forcing dataset. Some preliminary results can be seen in the figures below. We are also spinning up a CORE-NYF comparison case. For a more complete analysis have a look in the COSIMA Cookbook.

Plans in the coming weeks are to finalise spinups of our 0.25° case (ACCESS-OM2-025), and to begin running our flagship 0.1° simulation, ACCESS-OM2-01.

One of the goals of the COSIMA community is to create a common framework for evaluating and diagnosing model output. Our initial attempts to do this are encapsulated in the COSIMA Cookbook. The Cookbook aims to:

• Create standard Jupyter Notebooks for diagnosing model simulations, or groups of simulations;
• Documenting methods to efficiently interrogate large model datasets;
• Document model sensitivity studies; and
• Provide a gallery highlighting commonly used diagnostics.

The COSIMA Cookbook is publicly available on the OceansAus Github repository. We are also in the process of building documentation and the COSIMA gallery.

The second meeting of the Consortium for Ocean Sea Ice Modelling in Australia (COSIMA) was held in Sydney on the 25-26 May 2017. There were 36 attendees (2 via video, 26 gave presentations) representing 9 different institutions. A full participant list and links to presentations is included at the end of this report. The workshop goals and agenda is here.

The consortium has 3 years remaining of 4 years funding from an ARC Linkage Project to build a model configuration which underpins a variety of applications. The consortium also aims to provide a lasting platform that engages and benefits all ocean-sea ice scientists and technicians in Australia. This report begins with an assessment of milestones achieved since the May 2016 meeting, followed by a list of the 2017 workshop highlights and discussion/action items to be undertaken in 2017/2018.

Assessment of  COSIMA Community Action Items from 2016 Workshop

1. Need to create a website to outline COSIMA activities and developments. [We are in the process of acquiring the domain name cosima.org.au, and ANU will fund hosting and a web development team to put together a skeleton site.]
   • DONE (cosima.org.au).
2. We will formalise a code of ethics for COSIMA users to abide by, based on the DRAKKAR agreement. [Spence]
   • DONE (http://cosima.org.au/index.php/about-2/ethics/) 
3. We aim to register members on the website, and create a mailing list.
   • DONE (cosima-announce@mailman.anu.edu.au)
4. We will need to formalise the use of technologies to share code configurations, analysis tools and data. It may be possible to have a data project code on NCI to help with this.
   • Substantial Progress: i) hh5 storage for COSIMA model data at nci; ii) cosima cook book github repository in use for data processing scripts; iii) git hub model code repositories in use for some configurations.
5. We will release flagship configurations that are broadly supported by the community. The goal is to make the naming conventions consistent with the ACCESS community where possible, and to overlap with ACCESS developments where possible.  
   • Substantial Progress. New flagship configurations are under active developement: e.g. JRA-55 forcing of MOM-SIS and MOM-CICE configurations at multiple resolutions, including enhanced vertical resolution. Information regarding flagship simulations will be posted on website this quarter [Spence]. 
6. COSIMA will hold an annual meeting in the last week of May, for two days. Venue will rotate around the partner institutions. The focus of the meeting will be on science applications of ocean models, but will also include a technical component.
   • DONE. Next meeting in first week of June, 2018, Canberra.
7. We will aim to have more regular communications, including newsletters and video meetings.
   • Substantial Progress. Open COSIMA video conference meetings were held monthly. Linkage project CI meetings occurred quarterly. Regular Technical Working Group meeting were held. Meeting notes are often posted at cosima.org.au.
8. We will establish working groups within the community, along with a working group chair. Proposed groups include
   • Sea Ice Modelling [Heil]
     • Limited activity from this group in 2016
   • Technical [Ward]
     • Best communicating group that holds regular meetings, posts notes, has active community and achieves results.
   • Linkage Project [Hogg]
     • Quarterly meetings are held to gage model development progress and funding usage.
9. The major gap in the community was identified to be sea ice modelling and forecasting. We will all look for opportunities to attract visitors and expertise in this space.
   • Needs more work. 

Assessment of  ARC Linkage Project Action Items from 2016 Workshop

1. There is a strong need to consider vertical resolution in future high resolution model developments (Stewart).
   • DONE. http://www.sciencedirect.com/science/article/pii/S1463500317300434
2. Our MOM-CICE implementations using OASIS3-MCT coupling, but it is not clear that this solution will scale to 0.1° and beyond (Hannah)
   • Substantial Progress. Parallel OASIS-CICE now runs as fast as serial FMS-SIS with MOM5. Uncertainties remain regarding MOM6 coupling.
3. Forced ocean-sea ice models should be transferring to the JRA-55 forcing set when possible (Marsland)
   • DONE. JRA-55 forced configurations are underway in multiple groups. Fabio Dias is running coarse resolution MOM5-OASIS-CICE simulations. The CoE Oceans Group is running MOM5-FMS-SIS and MOM5-OAIS-CICE simulations at multiple resolutions. A relative year forcing data set has been developed from JRA-55 (contact Kyle Stewart)
4. There was general agreement that the Linkage Project should fund both the development and evaluation of new model configurations. This point implies that we should equally fund the technical and postdoctoral position, despite the partial funding of the program.
   • DONE. Hannah continues to excel at developing the model Linkage project model configurations. A scientist has been hired (starting Aug., 2017) to help develop and evaluate the model simulations.  
5. In the first year we will look to upgrade current MOM5 implementations, focussing on the vertical grid and the incorporation of CICE.
   • Substantial Progress. A 1/10 degree 75 level ACCESS-OM2 configuration consisting of MOM5 and CICE5 is being developed. Several scalability and performance problems have been overcome and we are now completing a spin-up run. The work has also resulted in improvements to the lower resolution 1 and 1/4 degree configurations and ACCESS coupled models.
6. In subsequent years we will look to adopt a MOM6 configuration.
   • Progress. Testing with MOM6 adaptive vertical coordinates is underway (Angus Gibson). Given that SIS2 is adopting much of the CICE5 code, uncertainties remain regarding the sea ice and coupling model to be used with MOM6.
7. As configurations develop and have been properly evaluated, they will be distributed to the community.
   • Substantial Progress. The distribution platform is under development with substantial progress on the back-end. A COSIMA data repository on NCI exists, and currently houses several flagship simulations. A repository for python analysis code that accesses the data repository is in use (https://github.com/OceansAus/cosima-cookbook). Substantial progress has been made in adopting effective big data analysis techniques (James Munroe).

2017 Workshop_Highlights

• Substantial progress in the development and analysis of coupled WOMBAT biogeochemistry simulations.
• Exciting opportunities within the newly funded CSIRO Decadal Prediction team.
• Our technical teams continue to excel at developing and optimising model configurations with effective collaborations. Hannah has made excellent progress in MOM-OASIS-CICE coupling. Ward provides a key conduit to understanding NCI optimisations. Heerdegen is supporting a multitude of operations. Fiedler continues to develop the new bathymetry.
• The enhanced capabilities of CICE over SIS remain. CICE6 is being developed under a community framework. SIS2 has adopted some of the CICE code.
• ACCESS is working towards the CMIP6 deadlines.
• The blue link forecast models are now perceived to be limited more by the ocean model configuration than the data assimilation.
• New model configurations (MOM5-OASIS-CICE, MOM5-FMS-SIS) using enhanced vertical resolution, JRA forcing (including an RYF forcing), and updated WOA initial conditions are underway.

COSIMA Community Discussion/Action Items from 2017 Workshop

1. Develop website into more of a community portal to flagship simulations. Provide model configuration and analysis with low barrier to entry for users. (Spence)
2. Develop the COSIMA Cookbook portal  with a gallery of options (Munroe). Improve the community usage and contribution to the cookbook. Provide a visual gallery of code examples (ALL).
3. Provide online chat capability for COSIMA model configurations. Look into using Slack teams. (Spence)
4. Provide list of ongoing experiments, links to data available and diagnostics wanted, contacts for expts. (Spence)
5. Consider separating models configs into Tier 1 (control flagships), 2 (perturbations from control), 3 (parameter sensitivities) to aid communication. (Spence)
6. Provide discussion platform for new experiments. Wider discussion of methodologies and diagnostics.
7. Provide platform for efficient explorations of parameter spaces (sea ice, neutral physics, bgc params, SSS restoring). How to share configurations? Tracking configs with git needs to be embraced by all! (Aidan, Hogg)
8. Explore CICE efficiency, coupling a wave model to CICE, CICE6-MOM6 capabilities. Be aware of similar progress being made at NCAR. (Heil).
9. Consider hiring admin support for the COSIMA website (England).

ARC Linkage Project Discussion/Action Items from 2017 Workshop

1. A new 1/10 degree model bathymetry data set continues to be underdevelopment with substantial progress towards a final product expected with a few months (Russ Fiedler)
2. Hannah continues to develop the MOM5-OASIS-CICE5 configurations. Expects to provide spinups at 3 model resolutions to the communitu (1, 1/4, 1/10). Discussion regarding the CICE settings (Heil), vertical resolution (Stewart), JRA forcing (Stewart) are needed. Does the model currently have a closed heat budget (Dias)?
3. Excited to welcome Andrew Kiss as the scientist funded from this ARC Linkage grant. Hoping for a model evaluation paper before the next meeting.

Attendees

(Where available, talk files are linked from the presenter’s name.)

Andy Hogg (ANU)
Gary Brassington (BoM)
Nic Hannah (Breakaway Labs)
Dave Bi (CSIRO)
Matthew England (UNSW)
Adele Morrison (ANU)
Ryan Holmes (UNSW)
Jan Zika (UNSW)
Angus Gibson (ANU)
Andy Kiss (ANU)
Veronique Lago (UNSW)
Laurie Meviel(UNSW)
Kaitlin Alexander (UNSW)
David Webb (UNSW)
Peter Dobrotoff (CSIRO)
Leela Frankcombe (UNSW)
James Munroe (Memorial, Canada)
Joan Llort (Utas)
Arnold Sullivan (CSIRO)
Xuebin Zhang (CSIRO)
Terry Okane (CSIRO, Remote)
Peter Oke (CSIRO)
Paul Spence (UNSW)
Richard Matear (CSIRO)
Clothilde Langlais (CSIRO)
Stephen Griffies (GFDL, Remote)
Russel Fiedler (CSIRO)
Marshall Ward (NCI)
Matthew Chamberlain (CSIRO)
Fabio Dias (UTas)
Aidan Heerdegen (ANU)
Petra Heil (AAD & ACE CRC)
Siobhan O’Farrell (Remote, CSIRO)
Xiaobing Zhou (BoM)

The COSIMA consortium is partly supported by an ARC Linkage Project. This project is now active, following sign-off from all partners in December 2016. The management committee for the project formally met for the first time on Friday 9th December. Following are abbreviated minutes from the meeting which outline our plans for 2017:

1. To advertise for a Postdoctoral/Research Fellow to coordinate COSIMA projects.
2. To enhance the vertical resolution of existing MOM5-SIS 0.1° model, with no change in horizontal resolution;
3. To enhance model bathymetry in coastal regions to take advantage of reduced minimum depth stemming from vertical resolution changes;
4. To couple MOM5 with CICE at 0.1° using OASIS3-MCT (we have a contract with Nic Hannah from Double Precision to perform this work);
5. To evaluate, refine, optimise and document the new model configuration.

Furthermore, we have confirmed that the 2017 COSIMA meeting will be in Sydney on May 25-26.